Internal Lab Wiki :: Stuart Lab Help :: Batch effect analysis

BatchQC Differential Expression

Expression Plots

These box plots show the median, SD, and outliers of expression values in your samples. Note that not all samples are shown: the program selects the Condition (or Batch) with the lowest number of samples (here: 14).

Figure 1A

Figure 1B

Summary

This is the data underlying the plot.

Figure 2

LIMMA

Figure 3