Systems Biology Group

Biblio

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Found 49 results
2012
The Cancer Genome Atlas Research Network, Comprehensive genomic characterization of squamous cell lung cancers, Nature, vol. advance online publication, p. –, 2012.
R. Kucherlapati and The Cancer Genome Atlas, Comprehensive molecular characterization of human colon and rectal cancer, Nature, vol. 487, pp. 330–337, 2012.
TCGA, Comprehensive molecular portraits of human breast tumours., Nature, vol. 490, pp. 61–70, 2012.
R. Karchin, Ochs, M. F., Stuart, J. M., and Bader, J. S., Identification of Aberrant Pathway and Network Activity from High-Throughput Data, in Pacific Symposium on Biocomputing, 2012.
S. Ng, Collisson, E. A., Sokolov, A., Goldstein, T., Gonzalez-Perez, A., Lopez-Bigas, N., Benz, C., Haussler, D., and Stuart, J. M., PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis, Bioinformatics, vol. 28, pp. i640-i646, 2012.
L. M. Heiser, Sadanandam, A., Kuo, W. - L., Benz, S. C., Goldstein, T. C., Ng, S., Gibb, W. J., Wang, N. J., Ziyad, S., Tong, F., Bayani, N., Hu, Z., Billig, J. I., Dueregger, A., Lewis, S., Jakkula, L., Korkola, J. E., Durinck, S., Pepin, F., Guan, Y., Purdom, E., Neuvial, P., Bengtsson, H., Wood, K. W., Smith, P. G., Vassilev, L. T., Hennessy, B. T., Greshock, J., Bachman, K. E., Hardwicke, M. A., Park, J. W., Marton, L. J., Wolf, D. M., Collisson, E. A., Neve, R. M., Mills, G. B., Speed, T. P., Feiler, H. S., Wooster, R. F., Haussler, D., Stuart, J. M., Gray, J. W., and Spellman, P. T., Subtype and pathway specific responses to anticancer compounds in breast cancer, Proceedings of the National Academy of Sciences, vol. 109, pp. 2724-2729, 2012.
M. J. Ellis, Ding, L., Shen, D., Luo, J., Suman, V. J., Wallis, J. W., Van Tine, B. A., Hoog, J., Goiffon, R. J., Goldstein, T. C., Ng, S., Lin, L., Crowder, R., Snider, J., Ballman, K., Weber, J., Chen, K., Koboldt, D. C., Kandoth, C., Schierding, W. S., McMichael, J. F., Miller, C. A., Lu, C., Harris, C. C., McLellan, M. D., Wendl, M. C., DeSchryver, K., Allred, C. D., Esserman, L., Unzeitig, G., Margenthaler, J., Babiera, G. V., Marcom, K. P., Guenther, J. M., Leitch, M., Hunt, K., Olson, J., Tao, Y., Maher, C. A., Fulton, L. L., Fulton, R. S., Harrison, M., Oberkfell, B., Du, F., Demeter, R., Vickery, T. L., Elhammali, A., Piwnica-Worms, H., McDonald, S., Watson, M., Dooling, D. J., Ota, D., Chang, L. - W., Bose, R., Ley, T. J., Piwnica-Worms, D., Stuart, J. M., Wilson, R. K., and Mardis, E. R., Whole-genome analysis informs breast cancer response to aromatase inhibition, Nature, vol. 486, pp. 353–360, 2012.
2010
M. H. Woehrmann, Gassner, N. C., Bray, W. M., Stuart, J. M., and Lokey, S., HALO384, Journal of Biomolecular Screening, vol. 15, pp. 196-205, 2010.
C. J. Vaske, Benz, S. C., Sanborn, Z. J., Earl, D., Szeto, C., Zhu, J., Haussler, D., and Stuart, J. M., Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM, Bioinformatics, vol. 26, pp. i237-i245, 2010.
The International Cancer Genome Consortium, International network of cancer genome projects, Nature, vol. 464, pp. 993 - 998, 2010.
C. E. Forsberg, Passegué, E., Prohaska, S. S., Wagers, A. J., Koeva, M., Stuart, J. M., and Weissman, I. L., Molecular Signatures of Quiescent, Mobilized and Leukemia-Initiating Hematopoietic Stem Cells, PLoS ONE, vol. 5, p. e8785, 2010.
B. - D. Wang, Kline, C., Pastor, D., Olson, T., Frank, B., Luu, T., Sharma, A., Robertson, G., Weirauch, M., Patierno, S., Stuart, J., Irby, R., and Lee, N., Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NFkappaB and microRNA network, Molecular Cancer, vol. 9, p. 98, 2010.
E. Bradley, Capps, D., Luftig, J., and Stuart, J., Towards Stylistic Consonance in Human Movement Synthesis, The Open Artificial Intelligence Journal, vol. 4, pp. 1-19, 2010.
C. D. House, Vaske, C. J., Schwartz, A. M., Obias, V., Frank, B., Luu, T., Sarvazyan, N., Irby, R., Strausberg, R. L., Hales, T. G., Stuart, J. M., and Lee, N. H., Voltage-Gated Na+ Channel SCN5A Is a Key Regulator of a Gene Transcriptional Network That Controls Colon Cancer Invasion, Cancer Research, vol. 70, pp. 6957-6967, 2010.

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