Principal Investigator - Josh Stuart


Josh Stuart
My passion is to develop computational approaches that aid in the discovery of new fundamental biology to enlighten our understanding of evolution, cell fate decisions, and disease mechanisms. I have a particular interest in probablistic approaches that infer and leverage genetic pathway information to ground our analysis in intuition. 


ChrisWong Chris Wong - Staff
I am working on various data visualizations in support of various projects in the lab, including Observation Deck and circle map network graphs for the WCDT prostate cancer team and BMEG project. I also help with the UCSC Genomics Core project developing tools for their genomics data storage and pipelining system.
RosalynHuffman Rosalyn Huffman - Staff
Executive Assistant to Josh Stuart and Stuart Laboratory Executive Coordinator


Alana Weinstein

Alana Weinstein - PhD Candidate                                                                  


Lucas Seninge

Lucas Seninge - PhD Candidate                                                                   

Bianca Xue

Bianca Xue - PhD Student                                                                   


Nathan Maulding

Nathan Maulding - PhD Student 
I am interested in building computational tools to capture and model the developmental histories, spatial positions, and environmental interactions of single cells and how they influence the biology of the system as a whole.





Corey Powell - MS - Statistical Consultant at Center for Statistical Consultation and Research, University of Michigan,                               Ann Arbor, Michigan 

Alex Williams - MS 2009 - currently at Gladstone Institute

Matt Weirauch - PhD - Associate Professor at Cincinnati Childrens Hospital Medical Center, Toronto, Ontario, Canada

Charlie Vaske - PhD - VP Bioinformatics at Claret Bioscience, Santa Cruz, CA 

Martina Koeva - PhD - Associate Principal Scientist, Merck, Cambridge, MA

Pinal Kanabar - MS - Bioinformatics Scientist at Waksman Genomics Core Facility

Sam Boyarsky - MS - Working as a naturalist at Exploring New Horizons Outdoor Schools in Loma Mar.

Chris Wong - MS - Working as staff in the Stuart lab, UCSC, Biomolecular Engineering.

Shyamini Vasili - MS - Software Quality Assurance & Test Engineer, Sunnyvale, California

Cath Penfold - Summer Student from UK

Daniel Sam - graduate student

Robert Shelansky - undergrad - currently PhD candidate at UCSC

Kevin Lam - PhD from UT at Dallas -Advanced Imaging Specialist, Dallas-Fort Worth Metroplex, TX 

Evan Paull - PhD - Senior Bioinformatics Data Scientist at BenevolentAI, Brooklyn, NY

Peter Harris Waltman - Postdoc - Associate Research Scientist at Columbia University Medical Center

Adrian Bivol - MS - Staff Scientist, Bioinformatics at Thermo Fisher Scientific, San Francisco Bay Area

Marcos Woehrmann - PhD -  Principal Bioinformatics Scientist at BillionToOne, Menlo Park, CA

Artem Sokolov - PhD - Research Associate, Harvard Medical School, Boston, MA

Daniel Carlin - PhD - Postdoctoral Scholar in the Ideker Lab, Depart of Medicine, University of California, San Diego

Sam Ng - PhD - Working as a Bioinformatics Scientist, Illumina, Inc., Menlo Park, CA

Kiley Graim - PhD - Flatiron Research Fellow, Simons Foundation, NYC, New York.  Effective January 2021, Assistant Professor, Department of Computer Information Science & Engineering (CISE), University of Florida

Yulia Newton - PhD - Bioinformatics Data Scientist at ImmunityBio, LLC, Aptos, CA 

Pablo Sanchez Cordero Gonzalez - Scientist - Hexagon Bio, Menlo Park, CA

Naveed Ziari - PhD Student - UC Berkeley, CA

Duncan McColl - BS - Software Engineer, Unnatural Products, Santa Cruz, CA

Andrew Blair - MS  -  Computational Researcher II at Gladstone Institutes, San Francisco, CA

David Haan - PhD - Bioinformatics Engineer - Bluestar Genomics, San Diego, CA

Vlado Uzunangelov - PhD - Translational Bioinformatics at Bristol-Myers Squibb, Redwood City, CA

Thomas Matthew - PhD - Bioinformatics Scientist, IGM Biosciences, San Jose, CA

Hongxu Ding-PhD, Postdoc Stuart Lab - University of Arizona, College of Pharmacy, Department of Pharmacy Practice & Science as a tenure track assistant professor 

Ioannis Anastopoulos - PhD - Software Engineer, UNP, Santa Cruz, CA

Verna Friedl - PhD - Bioinformatics Scientist, Bluestar Genomics Inc., San Mateo, CA

Rojin Safavi - PhD - Bioinformatics Scientist, Grail, Menlo Park, CA

Alexander Pearson - MS - Research Associate for IGM Biosciences, Mountain View, CA