Presentations

This is a space to archive our presentations. It is organized in reverse chronological order with the most recent entries at the top.

 

Date Presenter Event Location Title Link
July 2, 2015 Yulia Newton TGCT AWG presentation USC Preliminary integrative and pathway analysis of testicular data  
July 17, 2015 Kiley Graim MESO AWG presentation UCSC MESO pathway analysis (7.88MB PPTX)
Nov 19, 2014 David Haan rotation talk UCSC Can we correlate RNA expression and DNase hypersensitivity sites in DNA domains? (3.38MB PPTX)
Oct 21, 2014 Kiley Graim TCGA F2F Bethesda, MD A Pan-Cancer Signature Catalog to Classify Tumor Mixtures: application to Recognition of Metastic Disease in Prostate Cancer (9.8MB PPT)
2014 Sam Ng GRC   PARADIGM-SHIFT predicts the functional impact of ‘driver modules’ in multiple cancers using pathway impact analysis (2.98 MB PPT)
Sep 9, 2014 Josh Stuart SPORE Symposium Mission Bay Campus, UCSF UCSC Bioinformatics Analyses for WCDT 35.8M PPT
July 15, 2014 Josh Stuart ISMB Special Session Boston Guiding clinical decision-making with omics data 23.5M PPT
Sep 26, 2014 Josh Stuart Cincinnati Children's Hospital Medical Center Cincinnati Pan-Cancer to personalized cellular wiring diagrams of tumor cells 45.1M PPT
Sep 24, 2014 Josh Stuart CCMB Seminar Brown University Pan-Cancer to personalized cellular wiring diagrams of tumor cells 45.1M PPT
May 17, 2014 Josh Stuart Nature Genetics workshop on GWAS and Functional Genomics in Cancer Beijing Pan-Cancer to personalized cellular wiring diagrams of tumor cells 47.9M PPTX
May 12, 2014 Josh Stuart TCGA Symposium Bethesda Multi-platform analysis of 12 cancer types reveals molecular classification within and across tissues-of-origin 31.2M PPTX
Apr 14, 2014 Josh Stuart ISB's 2014 International Symposium on Systems Biology and Cancers, Big Data to Personalized Treatments Seattle Pan-Cancer: how might many tumors reveal the genetic pathways driving one patients tumor? 35.0M PPT
Feb 10, 2014 Josh Stuart Molecular Med Tri-Con San Francisco, CA Pan-Cancer to Personalized Pathway Targets 36.3M PPT
Feb 7, 2014 Josh Stuart Agilent Research Talk Santa Clara, CA Pan-Cancer: Lessons from 4000 tumor genomes of different origins 44.3M PPT
Dec 12, 2013 Josh Stuart Keynote to SFSU, California Academy of Sciences San Francisco Integrative genomics to reveal pathways activated across tumors 35.9M PPT
Nov 18, 2013 Josh Stuart GENSIPS Invited Talk Houston, TX Pan-Cancer to Personalized Cellular Wiring Diagrams of tumor Cells 40.3M PPT
Nov 15, 2013 Josh Stuart Genentech Research Talk Genentech, San Francisco Pan-Cancer to Personalized Cellular Wiring Diagrams of tumor Cells 41.6M PPT
Nov 5, 2013 Josh Stuart EMBL Cancer Genomics Meeting Heidelberg The TCGA Pan-Cancer Project 24.4M PPT
Oct 17, 2013 Josh Stuart Research Review Day UC Santa Cruz Searching for the wiring diagram of a tumor cell 37M PPT
Oct 2, 2013 Josh Stuart International Cancer Genome Consortium ? The TCGA Pan-Cancer Project 18.5M PPT
Sep 27, 2013 Josh Stuart Presentation to WashU Genome Center WashU Genome Center Searching for the wiring diagram of a single tumor cell 39.6M PPT
July 16, 2013 Josh Stuart Presentation to given to Hitachi Location UCSC-CBSE's role in Cancer Genomics Big Data Projects: Major Activities in TCGA, SU2C, ICGC 31.7M PPT
July 12, 2013 Josh Stuart ICGC Presentation ? Pathway analysis to connect information across cancer genomes 16.1M PDF
June 17, 2013 Josh Stuart WNAR Invited Talk UCLA Computational approaches to elucidate the impact of somatic mutations on cellular pathways 26.6M PPTX
June 2, 2013 Josh Stuart MoBS Invited Talk Austin, TX New Models and Maps for Biologists: Examples in Cancer Genomics 20.4M PPTX
May 24, 2013 Josh Stuart ASL Seminar NASA Ames Research Center. San Francisco, CA Computational approaches to elucidate the impact of somatic mutations on cellular pathways 24.9M PPTX
Jan 28, 2013 Josh Stuart Update to West Coast Dream Team for SU2C Prostate CSF Hellen Diller Family Comprehensive Cancer Center. San Francisco, CA Pathway-driven prediction of cancer outcomes 21.8M PPTX
Jan 3, 2013 Josh Stuart PSB 2013 Tutorial Big Island, HI Predicting mutation impact with aberrant pathway analysis 17.1M PPTX
Nov 15, 2012 Josh Stuart LINCS Update Bethesda, MD Linking genomic perturbations to transcriptional signatures reveals cancer cell circuitry 15.9M PPTX
Oct 25-26, 2012 Josh Stuart TCGA Pan-Can Workshop Santa Cruz, CA Logistics. Plans. Break-out groups 24.5M PPTX
Sep 27, 2012 Josh Stuart Beyond the Genome Boston, MA Pathway-based analysis of mutation impact 13.2M PPTX
Sep 5, 2012 Josh Stuart Talk given to MD Anderson Research Colloquium MD Anderson Predicting the impact of mutations using pathway-guided integrative genomics 15.2M PPTX
Apr 3, 2012 Josh Stuart Talk given to the Major Symposium on Designing Rational Combination Therapy for Cancer 2012 AACR Conference Predicting the impact of mutations using pathway-guided integrative genomics 14M PPTX
Apr 1, 2012 Josh Stuart TCGA Session 2012 AACR Conference Toward an integrated cross-cancer view 22M PPTX
Mar 22, 2012 Josh Stuart Biomed in 4D OHSU Using integrated pathway analysis to predict driving events in cancer 31M PPT
Nov 18, 2011 Josh Stuart 1st TCGA Symposium ? Patient-specific pathway analysis using PARADIGM identifies key activities in multiple cancers [22M PPT] [20M PDF]
Nov 15, 2011 Josh Stuart AACR-NCI-EORTC International Conference ? Patient-specific pathway analysis using PARADIGM identifies key activities in multiple cancers 22M PDF
Oct 27, 2011 Josh Stuart Japan-US Cooperative Cancer Research Program ? Predicting the impact of mutations in cancer using an integrated pathway approach 27.4M PPT
Oct 20, 2011 Josh Stuart UCSC Research Review Day Talk UCSC Inferring Pathway Activities from Integrated Cancer Genomics Data 30M PPT
Oct 6, 2011 Josh Stuart UCSC BME Seminar UCSC ? 30M PPT
Apr 5, 2011 Josh Stuart ? ? Pathway Analysis to Integrate Multidimensional Genomics Data 32.7M PPT
Apr 5, 2011 Josh Stuart AACR Major Symposia Talk ? Integrative Pathways to Maximally Predict Cancer Outcomes 15.5M PPTX
Sept 23, 2010 Josh Stuart UCSC BME Seminar UCSC ? 20M PDF
June 16, 2010 Josh Stuart UCSF Prostate Cancer Retreat ? ? 7.3M PPT
Feb 24, 2010 Josh Stuart TCGA Site Visit UCSC ? 9.6M PPT
Feb 19, 2010 Josh Stuart Advances in Bioinformatics and Genomics Talk ? ? 16M PPT] [link
Nov 9, 2009 Josh Stuart TCGA Steering Committee GDAC Presentation Broad Inst, Boston ? ~9.5M PPT
Nov 4, 2009 Josh Stuart UCSC genecats UCSC ? ~10M PPT
Oct 27, 2009 Josh Stuart MicroETox seminar ? ? ~27M PPTNote: I only presented up to slide 79, but I've included the others for reference.
June 24, 2009 Josh Stuart Presentation to Stand Up To Cancer Meeting at the AACR Philadelphia, PA ? 1.0M PPT
May 21, 2009 Josh Stuart TCGA Analysis Workshop Berkeley, CA ? 2.9M PPT
October 13, 2005 Josh Stuart BME 280b seminar. Presentation to first year bioinformatics students UCSC ? ~6.9M PPT
December 16, 2004 Josh Stuart UCSF Microarray Users Group (MUG) UCSF Discovering core molecular pathways on a global scale ~17M PPT