Presentations
This is a space to archive our presentations. It is organized in reverse chronological order with the most recent entries at the top.
| Date | Presenter | Event | Location | Title | Link |
| July 2, 2015 | Yulia Newton | TGCT AWG presentation | USC | Preliminary integrative and pathway analysis of testicular data | |
| July 17, 2015 | Kiley Graim | MESO AWG presentation | UCSC | MESO pathway analysis | (7.88MB PPTX) |
| Nov 19, 2014 | David Haan | rotation talk | UCSC | Can we correlate RNA expression and DNase hypersensitivity sites in DNA domains? | (3.38MB PPTX) |
| Oct 21, 2014 | Kiley Graim | TCGA F2F | Bethesda, MD | A Pan-Cancer Signature Catalog to Classify Tumor Mixtures: application to Recognition of Metastic Disease in Prostate Cancer | (9.8MB PPT) |
| 2014 | Sam Ng | GRC | PARADIGM-SHIFT predicts the functional impact of ‘driver modules’ in multiple cancers using pathway impact analysis | (2.98 MB PPT) | |
| Sep 9, 2014 | Josh Stuart | SPORE Symposium | Mission Bay Campus, UCSF | UCSC Bioinformatics Analyses for WCDT | 35.8M PPT |
| July 15, 2014 | Josh Stuart | ISMB Special Session | Boston | Guiding clinical decision-making with omics data | 23.5M PPT |
| Sep 26, 2014 | Josh Stuart | Cincinnati Children's Hospital Medical Center | Cincinnati | Pan-Cancer to personalized cellular wiring diagrams of tumor cells | 45.1M PPT |
| Sep 24, 2014 | Josh Stuart | CCMB Seminar | Brown University | Pan-Cancer to personalized cellular wiring diagrams of tumor cells | 45.1M PPT |
| May 17, 2014 | Josh Stuart | Nature Genetics workshop on GWAS and Functional Genomics in Cancer | Beijing | Pan-Cancer to personalized cellular wiring diagrams of tumor cells | 47.9M PPTX |
| May 12, 2014 | Josh Stuart | TCGA Symposium | Bethesda | Multi-platform analysis of 12 cancer types reveals molecular classification within and across tissues-of-origin | 31.2M PPTX |
| Apr 14, 2014 | Josh Stuart | ISB's 2014 International Symposium on Systems Biology and Cancers, Big Data to Personalized Treatments | Seattle | Pan-Cancer: how might many tumors reveal the genetic pathways driving one patients tumor? | 35.0M PPT |
| Feb 10, 2014 | Josh Stuart | Molecular Med Tri-Con | San Francisco, CA | Pan-Cancer to Personalized Pathway Targets | 36.3M PPT |
| Feb 7, 2014 | Josh Stuart | Agilent Research Talk | Santa Clara, CA | Pan-Cancer: Lessons from 4000 tumor genomes of different origins | 44.3M PPT |
| Dec 12, 2013 | Josh Stuart | Keynote to SFSU, California Academy of Sciences | San Francisco | Integrative genomics to reveal pathways activated across tumors | 35.9M PPT |
| Nov 18, 2013 | Josh Stuart | GENSIPS Invited Talk | Houston, TX | Pan-Cancer to Personalized Cellular Wiring Diagrams of tumor Cells | 40.3M PPT |
| Nov 15, 2013 | Josh Stuart | Genentech Research Talk | Genentech, San Francisco | Pan-Cancer to Personalized Cellular Wiring Diagrams of tumor Cells | 41.6M PPT |
| Nov 5, 2013 | Josh Stuart | EMBL Cancer Genomics Meeting | Heidelberg | The TCGA Pan-Cancer Project | 24.4M PPT |
| Oct 17, 2013 | Josh Stuart | Research Review Day | UC Santa Cruz | Searching for the wiring diagram of a tumor cell | 37M PPT |
| Oct 2, 2013 | Josh Stuart | International Cancer Genome Consortium | ? | The TCGA Pan-Cancer Project | 18.5M PPT |
| Sep 27, 2013 | Josh Stuart | Presentation to WashU Genome Center | WashU Genome Center | Searching for the wiring diagram of a single tumor cell | 39.6M PPT |
| July 16, 2013 | Josh Stuart | Presentation to given to Hitachi | Location | UCSC-CBSE's role in Cancer Genomics Big Data Projects: Major Activities in TCGA, SU2C, ICGC | 31.7M PPT |
| July 12, 2013 | Josh Stuart | ICGC Presentation | ? | Pathway analysis to connect information across cancer genomes | 16.1M PDF |
| June 17, 2013 | Josh Stuart | WNAR Invited Talk | UCLA | Computational approaches to elucidate the impact of somatic mutations on cellular pathways | 26.6M PPTX |
| June 2, 2013 | Josh Stuart | MoBS Invited Talk | Austin, TX | New Models and Maps for Biologists: Examples in Cancer Genomics | 20.4M PPTX |
| May 24, 2013 | Josh Stuart | ASL Seminar | NASA Ames Research Center. San Francisco, CA | Computational approaches to elucidate the impact of somatic mutations on cellular pathways | 24.9M PPTX |
| Jan 28, 2013 | Josh Stuart | Update to West Coast Dream Team for SU2C Prostate | CSF Hellen Diller Family Comprehensive Cancer Center. San Francisco, CA | Pathway-driven prediction of cancer outcomes | 21.8M PPTX |
| Jan 3, 2013 | Josh Stuart | PSB 2013 Tutorial | Big Island, HI | Predicting mutation impact with aberrant pathway analysis | 17.1M PPTX |
| Nov 15, 2012 | Josh Stuart | LINCS Update | Bethesda, MD | Linking genomic perturbations to transcriptional signatures reveals cancer cell circuitry | 15.9M PPTX |
| Oct 25-26, 2012 | Josh Stuart | TCGA Pan-Can Workshop | Santa Cruz, CA | Logistics. Plans. Break-out groups | 24.5M PPTX |
| Sep 27, 2012 | Josh Stuart | Beyond the Genome | Boston, MA | Pathway-based analysis of mutation impact | 13.2M PPTX |
| Sep 5, 2012 | Josh Stuart | Talk given to MD Anderson Research Colloquium | MD Anderson | Predicting the impact of mutations using pathway-guided integrative genomics | 15.2M PPTX |
| Apr 3, 2012 | Josh Stuart | Talk given to the Major Symposium on Designing Rational Combination Therapy for Cancer | 2012 AACR Conference | Predicting the impact of mutations using pathway-guided integrative genomics | 14M PPTX |
| Apr 1, 2012 | Josh Stuart | TCGA Session | 2012 AACR Conference | Toward an integrated cross-cancer view | 22M PPTX |
| Mar 22, 2012 | Josh Stuart | Biomed in 4D | OHSU | Using integrated pathway analysis to predict driving events in cancer | 31M PPT |
| Nov 18, 2011 | Josh Stuart | 1st TCGA Symposium | ? | Patient-specific pathway analysis using PARADIGM identifies key activities in multiple cancers | [22M PPT] [20M PDF] |
| Nov 15, 2011 | Josh Stuart | AACR-NCI-EORTC International Conference | ? | Patient-specific pathway analysis using PARADIGM identifies key activities in multiple cancers | 22M PDF |
| Oct 27, 2011 | Josh Stuart | Japan-US Cooperative Cancer Research Program | ? | Predicting the impact of mutations in cancer using an integrated pathway approach | 27.4M PPT |
| Oct 20, 2011 | Josh Stuart | UCSC Research Review Day Talk | UCSC | Inferring Pathway Activities from Integrated Cancer Genomics Data | 30M PPT |
| Oct 6, 2011 | Josh Stuart | UCSC BME Seminar | UCSC | ? | 30M PPT |
| Apr 5, 2011 | Josh Stuart | ? | ? | Pathway Analysis to Integrate Multidimensional Genomics Data | 32.7M PPT |
| Apr 5, 2011 | Josh Stuart | AACR Major Symposia Talk | ? | Integrative Pathways to Maximally Predict Cancer Outcomes | 15.5M PPTX |
| Sept 23, 2010 | Josh Stuart | UCSC BME Seminar | UCSC | ? | 20M PDF |
| June 16, 2010 | Josh Stuart | UCSF Prostate Cancer Retreat | ? | ? | 7.3M PPT |
| Feb 24, 2010 | Josh Stuart | TCGA Site Visit | UCSC | ? | 9.6M PPT |
| Feb 19, 2010 | Josh Stuart | Advances in Bioinformatics and Genomics Talk | ? | ? | 16M PPT] [link |
| Nov 9, 2009 | Josh Stuart | TCGA Steering Committee GDAC Presentation | Broad Inst, Boston | ? | ~9.5M PPT |
| Nov 4, 2009 | Josh Stuart | UCSC genecats | UCSC | ? | ~10M PPT |
| Oct 27, 2009 | Josh Stuart | MicroETox seminar | ? | ? | ~27M PPTNote: I only presented up to slide 79, but I've included the others for reference. |
| June 24, 2009 | Josh Stuart | Presentation to Stand Up To Cancer Meeting at the AACR | Philadelphia, PA | ? | 1.0M PPT |
| May 21, 2009 | Josh Stuart | TCGA Analysis Workshop | Berkeley, CA | ? | 2.9M PPT |
| October 13, 2005 | Josh Stuart | BME 280b seminar. Presentation to first year bioinformatics students | UCSC | ? | ~6.9M PPT |
| December 16, 2004 | Josh Stuart | UCSF Microarray Users Group (MUG) | UCSF | Discovering core molecular pathways on a global scale | ~17M PPT |
| Attachment | Size |
|---|---|
 Graim_TCGA_Oct2014.ppt | 9.83 MB |
| 2014-07-30_ucsc_paradigmshift_grc_v2.ppt | 2.98 MB |
| david_haan_Rotation_Talk.pptx | 3.38 MB |
| PARADIGM_MESO_2015_07.pptx | 7.88 MB |
 Testicular cancer initial update | 7.37 MB |