Biblio

Found 231 results

2011

N. B. Zuckerman, Quan, T. K., Bray, W. M., Ruybal, J. E., Gassner, N. C., Stuart, J. M., Hartzog, G. A., R Lokey, S., and Konopelski, J. P., “Synthesis of a small molecule drug lead: Tamoxilog”, in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, vol. 241.

J. Zhu, J Sanborn, Z., Benz, S. C., Craft, B., Szeto, C., Kober, K. M., Goldman, M., Meyer, L., Vaske, C., Collisson, E., and , “The UCSC Cancer Genomics Browser”. American Association for Cancer Research, 2011.

Z. J. Sanborn, Benz, S. C., Craft, B., Szeto, C., Kober, K. M., Meyer, L., Vaske, C. J., Goldman, M., Smith, K. E., Kuhn, R. M., Karolchik, D., Kent, J. W., Stuart, J. M., Haussler, D., and Zhu, J., “The UCSC cancer genomics browser: update 2011”, Nucleic Acids Research, vol. 39, pp. D951-D959, 2011.

C. W. Szeto, Zhu, J., Durbin, J., Benz, S., Vaske, C., Stuart, J., and Haussler, D., “Using matrix factorization to discover clinically-relevant molecular signatures across cancers”. American Association for Cancer Research, 2011.

C. M. Tamble, St. Onge, R. P., Giaever, G., Nislow, C., Williams, A. G., Stuart, J. M., and Lokey, S. R., “The synthetic genetic interaction network reveals small molecules that target specific pathways in Sacchromyces cerevisiae”, Mol. BioSyst., vol. 7, p. -, 2011.

C. M. Tamble, St Onge, R. P., Giaever, G., Nislow, C., Williams, A. G., Stuart, J. M., and R Lokey, S., “The synthetic genetic interaction network reveals small molecules that target specific pathways in Sacchromyces cerevisiae”, Molecular BioSystems, vol. 7, pp. 2019–2030, 2011.

2010

M. H. Woehrmann, Gassner, N. C., Bray, W. M., Stuart, J. M., and Lokey, S., “HALO384”, Journal of Biomolecular Screening, vol. 15, pp. 196-205, 2010.

M. H. Woehrmann, Gassner, N. C., Bray, W. M., Stuart, J. M., and Lokey, S., “HALO384: a halo-based potency prediction algorithm for high-throughput detection of antimicrobial agents”, Journal of biomolecular screening, vol. 15, pp. 196–205, 2010.

C. J. Vaske, Benz, S. C., Sanborn, Z. J., Earl, D., Szeto, C., Zhu, J., Haussler, D., and Stuart, J. M., “Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM”, Bioinformatics, vol. 26, pp. i237-i245, 2010.

C. J. Vaske, Benz, S. C., J Sanborn, Z., Earl, D., Szeto, C., Zhu, J., Haussler, D., and Stuart, J. M., “Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM”, Bioinformatics, vol. 26, pp. i237–i245, 2010.

C. J. Vaske, Benz, S. C., Sanborn, J. Z., Earl, D., Szeto, C., Zhu, J., Haussler, D., and Stuart, J. M., “Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinformatics 26, i237–i245 (2010)”, This paper describes an application of approaches from the probabilistic graphical models in the identification of pathways or dependencies deviating from a given norm. CAS PubMed Article, 2010.

The International Cancer Genome Consortium, “International network of cancer genome projects”, Nature, vol. 464, pp. 993 - 998, 2010.

I. Cancer Gen Consortium and , “International network of cancer genome projects”, Nature, vol. 464, p. 993, 2010.

C. E. Forsberg, Passegué, E., Prohaska, S. S., Wagers, A. J., Koeva, M., Stuart, J. M., and Weissman, I. L., “Molecular Signatures of Quiescent, Mobilized and Leukemia-Initiating Hematopoietic Stem Cells”, PLoS ONE, vol. 5, p. e8785, 2010.

C. E Forsberg, Passegué, E., Prohaska, S. S., Wagers, A. J., Koeva, M., Stuart, J. M., and Weissman, I. L., “Molecular signatures of quiescent, mobilized and leukemia-initiating hematopoietic stem cells”, PloS one, vol. 5, p. e8785, 2010.

J. K. Lee, Phillips, J. W., Smith, B. A., Park, J. Wook, Stoyanova, T., Baertsch, R., Sokolov, A., Meyerowitz, J. G., Mathis, C., Cheng, D., and , “N-Myc drives small cell neuroendocrine carcinoma initiated from human prostate epithelial cells”, Science (New York, NY), vol. 329, p. 568, 2010.

S. Christopher, Benz, S., Vaske, C., J Sanborn, Z., Zhu, J., Stuart, J., and Haussler, D., “Non-negative matrix factorization (NMF) as a clinical classifier: An example with chemotherapy response in ovarian cancer”. American Association for Cancer Research, 2010.

B. - D. Wang, Kline, C., Pastor, D., Olson, T., Frank, B., Luu, T., Sharma, A., Robertson, G., Weirauch, M., Patierno, S., Stuart, J., Irby, R., and Lee, N., “Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NFkappaB and microRNA network”, Molecular Cancer, vol. 9, p. 98, 2010.

B. - D. Wang, Kline, C. Leah B., Pastor, D. M., Olson, T. L., Frank, B., Luu, T., Sharma, A. K., Robertson, G., Weirauch, M. T., Patierno, S. R., and , “Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NF$ąppa$B and microRNA network”, Molecular cancer, vol. 9, p. 98, 2010.

C. House, Vaske, C., Schwartz, A., Obias, V., Sarvazyan, N., Hales, T., Stuart, J., and Lee, N., “Role of voltage-gated Na+ channels in the metastatic potential of colon cancer cells”. American Association for Cancer Research, 2010.

E. Bradley, Capps, D., Luftig, J., and Stuart, J., “Towards Stylistic Consonance in Human Movement Synthesis”, The Open Artificial Intelligence Journal, vol. 4, pp. 1-19, 2010.

Z. J Sanborn, Benz, S. C., Craft, B., Szeto, C., Kober, K. M., Meyer, L., Vaske, C. J., Goldman, M., Smith, K. E., Kuhn, R. M., and , “The UCSC cancer genomics browser: update 2011”, Nucleic acids research, vol. 39, pp. D951–D959, 2010.

C. D. House, Vaske, C. J., Schwartz, A. M., Obias, V., Frank, B., Luu, T., Sarvazyan, N., Irby, R., Strausberg, R. L., Hales, T. G., Stuart, J. M., and Lee, N. H., “Voltage-Gated Na+ Channel SCN5A Is a Key Regulator of a Gene Transcriptional Network That Controls Colon Cancer Invasion”, Cancer Research, vol. 70, pp. 6957-6967, 2010.

C. D. House, Vaske, C. J., Schwartz, A. M., Obias, V., Frank, B., Luu, T., Sarvazyan, N., Irby, R., Strausberg, R. L., Hales, T. G., and , “Voltage-gated Na+ channel SCN5A is a key regulator of a gene transcriptional network that controls colon cancer invasion”, Cancer research, pp. 0008–5472, 2010.

2009

M. Koeva, E Forsberg, C., and Stuart, J. M., “Core stemness mechanisms revealed through homology”, BMC bioinformatics, vol. 10, p. O4, 2009.

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