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Welcome to the wiki of the Systems Biology Group at UCSC.

soe:google-calendar:btm9b1905laph0ajfh0ehvcje8@group.calendar.google.com

(I Need Help! The Stuart Lab Help Page will help you get oriented)

Sysbio Projects

• MicromonasPathways: project with MBARI to study the biological pathways of Micromonas pusilla
• DrugTargets: drug target prediction project. Alex Williams
• BEAST: an online workspace for manipulating biological sets.
• InteractionBrowser: a web application for combining and browsing gene interaction data
• Flocks: Functionally Linked blOCKS
• CancerNetsTier3: reverse-engineering signaling networks from knock-downs
• ChromWaves: detecting spatial and temporal patterns of expressed genes
• Stem cell classification compendium: classifying new cell populations based on existing expression data
• Core stemness: a paralog perspective: identifying core stemness group through paralogy
• DiscrimRecommender: a recommender that incorporates a contrast query
• Grinder: A web application for converting between keyspaces. Greg Dougherty
• WormPhenotypeSimilarity: defining and evaluating a new method to determine phenotype similarity
• RecurrentNetworks: networks of gene pairs coexpressed across multiple datasets
• miRNAs in HSC: role of miRNAs in differentiation of HSCs
• CSCPipeline: Chemical Screening Center analysis Pipeline
• Cytological Profiling Pipeline: Cytological profiling pipeline.
• StemCellMine
• MetaTranscriptomes - Ocean transcription reads mapped to community-driven pathways
• CancerClinicalPathways -- scoring pathways in integrative clinical cancer pathways

People's Pages

• Daniel Carlin
• Alex Williams
• Greg Dougherty
• Martina Koeva
• Rotation Students

Lab News and Information

• Travel Guides - Get reimbursed for travel expenses.
• Refereeing - Thumbs Up or Down? The whole lab can weigh-in on peer-review.
• MeetingMinutes: Minutes for lab meetings, including slides from talks.
• GroupMeetings: Schedule of group meetings. Check here to see when you are scheduled to speak.
• ProjectMeetings: Individual meeting schedules.
• Lab Czars: Who can I talk to about an issue in the lab? Find the Czar in charge of various lab administrative responsibilities (code, hardware, data, activities, etc.,).
• Hardware Resources: Laptops and Desktops
• Software Resources: A list of all the lab software (perl scripts, specially-installed bioinformatics tools, and more)
• New Software: A list of all the new software and scripts. If you add a new script, or make an important change, list it here so that people will know about it.
• Relevant Journal Articles: A list of papers relevant to the lab, broken into categories.
• InTheNews
• Lab Calendar
• Josh's Calendar

Science News

• Bioinformatics RSS Feeds (OPML file): Text file of useful Bioinformatics RSS feeds. It is in a format that can be easily imported into the open-source Mac RSS newsreader Vienna.