Meta-analysis (combining data sets)
Network based
- A scalable method for integration and functional analysis of multiple microarray datasets (Huttenhower 2006, Olga Troyanskaya lab)
- A data integration methodology for systems biology (Hwang 2005, Leroy Hood lab)
Gene based
- A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments (Hong 2008)
- Statistical tools for synthesizing lists of differentially expressed features in related experiments (Blangiardo 2007)
- Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes (Warnat 2005)
- Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer (Rhodes 2002)
Gene set based
- Modeling cancer progression via pathway dependencies (Edelman 2008)
-- Main.Weirauch - 09 Oct 2008
