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Found 9 results
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Paull, Evan O
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2017
M. Niepel
,
Hafner, M.
,
Duan, Q.
,
Wang, Z.
,
Paull, E. O.
,
Chung, M.
,
Lu, X.
,
Stuart, J. M.
,
Golub, T. R.
,
Subramanian, A.
, and
,
“
Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling
”
,
Nature Communications
, vol. 8, p. 1186, 2017.
D. E. Carlin
,
Paull, E. O.
,
Graim, K.
,
Wong, C. K.
,
Bivol, A.
,
Ryabinin, P.
,
Ellrott, K.
,
Sokolov, A.
, and
Stuart, J. M.
,
“
Prophetic Granger Causality to infer gene regulatory networks
”
,
PloS one
, vol. 12, p. e0170340, 2017.
K. Graim
,
Liu, T. Ting
,
Achrol, A. S.
,
Paull, E. O.
,
Newton, Y.
,
Chang, S. D.
,
Harsh, G. R.
,
Cordero, S. P.
,
Rubin, D. L.
, and
Stuart, J. M.
,
“
Revealing cancer subtypes with higher-order correlations applied to imaging and omics data
”
,
BMC medical genomics
, vol. 10, p. 20, 2017.
2016
S. M. Hill
,
Heiser, L. M.
,
Cokelaer, T.
,
Unger, M.
,
Nesser, N. K.
,
Carlin, D. E.
,
Zhang, Y.
,
Sokolov, A.
,
Paull, E. O.
,
Wong, C. K.
, and
,
“
Inferring causal molecular networks: empirical assessment through a community-based effort
”
,
Nature methods
, vol. 13, p. 310, 2016.
A. Sokolov
,
Paull, E. O.
, and
Stuart, J. M.
,
“
One-class detection of cell states in tumor subtypes
”
, in
Biocomputing 2016: Proceedings of the Pacific Symposium
, 2016, pp. 405–416.
A. Sokolov
,
Carlin, D. E.
,
Paull, E. O.
,
Baertsch, R.
, and
Stuart, J. M.
,
“
Pathway-based genomics prediction using generalized elastic net
”
,
PLoS computational biology
, vol. 12, p. e1004790, 2016.
J. M. Drake
,
Paull, E. O.
,
Graham, N. A.
,
Lee, J. K.
,
Smith, B. A.
,
Stoyanova, T.
,
Faltermeier, C. M.
,
Carlin, D. E.
,
Vashisht, A.
,
Huang, J.
, and
,
“
Patient-specific druggable networks in lethal prostate cancer through proteome-guided multi-omic integration
”
. American Association for Cancer Research, 2016.
J. M. Drake
,
Paull, E. O.
,
Graham, N. A.
,
Lee, J. K.
,
Smith, B. A.
,
Titz, B.
,
Stoyanova, T.
,
Faltermeier, C. M.
,
Uzunangelov, V.
,
Carlin, D. E.
, and
,
“
Phosphoproteome integration reveals patient-specific networks in prostate cancer
”
,
Cell
, vol. 166, pp. 1041–1054, 2016.
2013
E. O. Paull
,
Carlin, D. E.
,
Niepel, M.
,
Sorger, P. K.
,
Haussler, D.
, and
Stuart, J. M.
,
“
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)
”
,
Bioinformatics
, vol. 29, pp. 2757–2764, 2013.