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Found 20 results
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Stuart, Josh
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2017
H. Beale
,
Lam, D. Linh
,
Vivian, J.
,
Newton, Y.
,
Shah, A. Tayi
,
Bjork, I.
,
Goldstein, T.
,
Brooks, A. N.
,
Stuart, J.
,
Salama, S.
, and
,
“
Identifying confidently measured genes in single pediatric cancer patient samples using RNA sequencing
”
. American Association for Cancer Research, 2017.
O. Morozova
,
Newton, Y.
,
Shah, A. Tayi
,
Beale, H.
,
Lam, D. Linh
,
Vivian, J.
,
Bjork, I.
,
Goldstein, T.
,
Stuart, J.
,
Salama, S.
, and
,
“
A pan-cancer analysis framework for incorporating gene expression information into clinical interpretation of pediatric cancer genomic data
”
. American Association for Cancer Research, 2017.
2016
W. Kim
,
Ryan, C. J.
,
Zhang, L.
,
Youngren, J.
,
Wilton, J.
,
Alumkal, J. J.
,
Beer, T. M.
,
Baertsch, R.
,
Stuart, J.
,
Chi, K. N.
, and
,
“
Dehydroepiandrosterone (DHEA) in metastatic castration-resistant prostate cancer (mCRPC): Preliminary results from the SU2C/PCF/AACR West Coast Dream Team (WCDT).
”
. American Society of Clinical Oncology, 2016.
W. Kim
,
Ryan, C. J.
,
Zhang, L.
,
Youngren, J.
,
Wilton, J.
,
Alumkal, J. J.
,
Beer, T. M.
,
Baertsch, R.
,
Stuart, J.
,
Chi, K. N.
, and
,
“
Dehydroepiandrosterone in metastatic castration-resistant prostate cancer: Preliminary results from the SU2C-PCF West Coast Dream Team (WCDT).
”
. American Society of Clinical Oncology, 2016.
M. Hafner
,
Niepel, M.
,
Duan, Q.
,
Paull, E.
,
Stuart, J.
,
Subramanian, A.
,
Ma’ayan, A.
, and
Sorger, P. K.
,
“
Transcriptional landscape of drug response guides the design of potent and synergistic drug combinations
”
. American Association for Cancer Research, 2016.
2014
C. Yau
,
Benz, S.
,
Vaske, C.
,
Ng, S.
,
Stuart, J.
, and
Benz, C. C.
,
“
Differential pathway activation associated with domain-specific PIK3CA mutations
”
,
Cancer Research
, vol. 74, pp. 4165–4165, 2014.
A. Bivol
,
Graim, K.
,
Paull, E.
,
Carlin, D.
,
Baertsch, R.
,
Sokolov, A.
, and
Stuart, J.
,
“
Identification of pathways relevant for metastatic site prediction in prostate cancer
”
. American Association for Cancer Research, 2014.
J. J. Alumkal
,
Heiser, L.
,
Beer, T. M.
,
Small, E. Jay
,
Baertsch, R.
,
Stuart, J.
,
King, C.
,
Korkola, J.
,
Cetnar, J.
,
Graff, J. Nicole
, and
,
“
Identifying enzalutamide resistance mechanisms in men with castration-resistant prostate cancer.
”
. American Society of Clinical Oncology, 2014.
G. Thomas
,
Youngren, J.
,
Ryan, C. J.
,
Beer, T. M.
,
Gleave, M. Edwin
,
Evans, C. P.
,
Stuart, J.
,
Rettig, M.
,
Toschi, A.
,
Foye, A.
, and
,
“
Molecular profiling of metastatic castration-resistant prostate cancer (mCRPC): Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team (WCDT).
”
. American Society of Clinical Oncology, 2014.
D. M. Wolf
,
Fan, C.
,
Hoadley, K. A.
,
Yau, C.
,
Sokolov, A.
,
Network, T. C. G. A.
,
Stuart, J.
,
Perou, C.
, and
Veer, Lvan't
,
“
Thousands of published cancer signatures and pathways can be collapsed into a handful of non-redundant gene programs: a TCGA pan-cancer analysis
”
. American Association for Cancer Research, 2014.
2013
L. Omberg
,
Ellrott, K.
,
Yuan, Y.
,
Kandoth, C.
,
Wong, C.
,
Kellen, M. R.
,
Friend, S. H.
,
Stuart, J.
,
Liang, H.
, and
Margolin, A. A.
,
“
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas
”
,
Nature genetics
, vol. 45, p. 1121, 2013.
B. Craft
,
Swatloski, T.
,
Goldman, M.
,
Ellrott, K.
,
Ma, S.
,
Wilks, C.
,
Stuart, J.
,
Haussler, D.
, and
Zhu, J.
,
“
The New UCSC Cancer Genomics Browser
”
,
Nucleic Acids Research
, vol. 41, no. D1, 2013.
M. Goldman
,
Craft, B.
,
Swatloski, T.
,
Ellrott, K.
,
Cline, M.
,
Diekhans, M.
,
Ma, S.
,
Wilks, C.
,
Stuart, J.
,
Haussler, D.
, and
Zhu, J.
,
“
The UCSC Cancer Genomics Browser: update 2013.
”
,
Nucleic Acids Res
, vol. 41, pp. D949–D954, 2013.
2012
M. Goldman
,
Craft, B.
,
Swatloski, T.
,
Ellrott, K.
,
Cline, M.
,
Diekhans, M.
,
Wilks, C.
,
Stuart, J.
,
Haussler, D.
, and
Zhu, J.
,
“
The UCSC cancer genomics browser: update 2013
”
,
Nucleic acids research
, vol. 41, pp. D949–D954, 2012.
2011
B. Craft
,
Ellrott, K.
,
Goldman, M.
,
Wilks, C.
,
Szeto, C.
,
Ma, S.
,
Stuart, J.
,
Zhu, J.
, and
Haussler, D.
,
“
Abstract A39: The UCSC Cancer Genomics Browser
”
. American Association for Cancer Research, 2011.
2007
N. Salomonis
,
Hanspers, K.
,
Zambon, A.
,
Vranizan, K.
,
Lawlor, S.
,
Dahlquist, K.
,
Doniger, S.
,
Stuart, J.
,
Conklin, B.
, and
Pico, A.
,
“
GenMAPP 2: new features and resources for pathway analysis
”
,
BMC Bioinformatics
, vol. 8, p. 217, 2007.
N. Salomonis
,
Hanspers, K.
,
Zambon, A. C.
,
Vranizan, K.
,
Lawlor, S. C.
,
Dahlquist, K. D.
,
Doniger, S. W.
,
Stuart, J.
,
Conklin, B. R.
, and
Pico, A. R.
,
“
GenMAPP 2: new features and resources for pathway analysis
”
,
BMC bioinformatics
, vol. 8, p. 217, 2007.
2005
M. Weirauch
and
Stuart, J.
,
“
Discovering functional transcription factor binding from superimposed gene networks
”
, in
Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts. IEEE
, 2005, pp. 178–179.
2003
A. B. Owen
,
Stuart, J.
,
Mach, K.
,
Villeneuve, A. M.
, and
Kim, S.
,
“
A Gene Recommender Algorithm to Identify Coexpressed Genes in C. elegans
”
,
Genome Research
, vol. 13, pp. 1828-1837, 2003.
A. B. Owen
,
Stuart, J.
,
Mach, K.
,
Villeneuve, A. M.
, and
Kim, S.
,
“
A gene recommender algorithm to identify coexpressed genes in C. elegans
”
,
Genome research
, vol. 13, pp. 1828–1837, 2003.