Biblio

Found 231 results

2015

B. Paten, Diekhans, M., Druker, B. J., Friend, S., Guinney, J., Gassner, N., Guttman, M., W Kent, J., Mantey, P., Margolin, A. A., and , “The NIH BD2K center for big data in translational genomics”, Journal of the American Medical Informatics Association, vol. 22, pp. 1143–1147, 2015.

J. N. Weinstein, Kim, J., Creighton, C. J., Akbani, R., Hoadley, K. A., Kim, W. Y., Morgan, M. B., Hinoue, T., Cherniack, A., Su, X., and , “Progress in The Cancer Genome Atlas bladder cancer project”. American Association for Cancer Research, 2015.

B. A. Smith, Sokolov, A., Uzunangelov, V., Baertsch, R., Newton, Y., Graim, K., Mathis, C., Cheng, D., Stuart, J. M., and Witte, O. N., “A basal stem cell signature identifies aggressive prostate cancer phenotypes”, Proceedings of the National Academy of Sciences, vol. 112, pp. E6544–E6552, 2015.

A. Abeshouse, Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C. D., Annala, M., Aprikian, A., Armenia, J., Arora, A., and , “The molecular taxonomy of primary prostate cancer”, Cell, vol. 163, pp. 1011–1025, 2015.

2014

E. Jay Small, Youngren, J., Thomas, G., Olson, S., Toschi, A., Foye, A., Alumkal, J. J., Rettig, M., Gleave, M. Edwin, Evans, C. P., and , “Androgen receptor (AR) amplification in patients with metastatic castration-resistant prostate cancer (mCRPC) refractory to therapy with abiraterone acetate or enzalutamide: Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team ”. American Society of Clinical Oncology, 2014.

Y. Yuan, Van Allen, E. M., Omberg, L., Wagle, N., Amin-Mansour, A., Sokolov, A., Byers, L. A., Xu, Y., Hess, K. R., Diao, L., and , “Assessing the clinical utility of cancer genomic and proteomic data across tumor types”, Nature biotechnology, vol. 32, p. 644, 2014.

S. Brunak, DE LA VEGA, F. R. A. N. C. I. S. C. O. M., Margolin, A., Raphael, B. J., Raetsch, G., and Stuart, J. M., “Cancer Panomics: Computational Methods and Infrastructure for Integrative Analysis of Cancer High-Throughput “Omics” Data”, in Pacific Symposium on Biocomputing Co-Chairs, 2014, pp. 8–9.

M. Parfenov, Pedamallu, C. Sekhar, Gehlenborg, N., Freeman, S. S., Danilova, L., Bristow, C. A., Lee, S., Hadjipanayis, A. G., Ivanova, E. V., Wilkerson, M. D., and , “Characterization of HPV and host genome interactions in primary head and neck cancers”, Proceedings of the National Academy of Sciences, vol. 111, pp. 15544–15549, 2014.

J. N. Weinstein, Kim, J., Creighton, C. J., Akbani, R., Hoadley, K. A., Kim, W. Y., Morgan, M. B., Hinoue, T., Cherniack, A., Su, X., and , “Comprehensive characterization of urothelial bladder cancer: a TCGA Project update”. American Association for Cancer Research, 2014.

C. Genome Atl Network and , “Comprehensive molecular characterization of gastric adenocarcinoma”, Nature, vol. 513, p. 202, 2014.

C. Genome Atl Network and , “Comprehensive molecular characterization of urothelial bladder carcinoma”, Nature, vol. 507, p. 315, 2014.

C. Genome Atl Network and , “Comprehensive molecular profiling of lung adenocarcinoma”, Nature, vol. 511, p. 543, 2014.

E. Duhig, Clarke, B., Yang, I. A., Fong, K. M., Hunter, L., Windsor, M., Bowman, R. V., Network, C. Genome Atl, and , “Comprehensive molecular profiling of lung adenocarcinoma: the cancer genome atlas research network”, Nature, vol. 511, pp. 543–550, 2014.

J. N. Weinstein, Kim, J., Creighton, C. J., Akbani, R., Hoadley, K. A., Kim, W. Y., Morgan, M. B., Hinoue, T., Rosenberg, J. E., Bajorin, D. F., and , “Comprehensive molecular profiling of urothelial bladder cancer at the DNA, RNA, and protein levels: A TCGA project.”. American Society of Clinical Oncology, 2014.

A. Z. Worden, Callister, S., Stuart, J., and Smith, R., “Connecting genomic capabilities to physiology and response: Systems biology of the widespread alga Micromonas”. Monterey Bay Aquarium Research Institute (MBARI), Moss Landing, CA (United States), 2014.

C. Yau, Benz, S., Vaske, C., Ng, S., Stuart, J., and Benz, C. C., “Differential pathway activation associated with domain-specific PIK3CA mutations”, Cancer Research, vol. 74, pp. 4165–4165, 2014.

P. C. Boutros, Ewing, A. D., Ellrott, K., Norman, T. C., Dang, K. K., Hu, Y., Kellen, M. R., Suver, C., J Bare, C., Stein, L. D., and , “Global optimization of somatic variant identification in cancer genomes with a global community challenge”, Nature genetics, vol. 46, p. 318, 2014.

A. Bivol, Graim, K., Paull, E., Carlin, D., Baertsch, R., Sokolov, A., and Stuart, J., “Identification of pathways relevant for metastatic site prediction in prostate cancer”. American Association for Cancer Research, 2014.

J. J. Alumkal, Heiser, L., Beer, T. M., Small, E. Jay, Baertsch, R., Stuart, J., King, C., Korkola, J., Cetnar, J., Graff, J. Nicole, and , “Identifying enzalutamide resistance mechanisms in men with castration-resistant prostate cancer.”. American Society of Clinical Oncology, 2014.

N. Agrawal, Akbani, R., B Aksoy, A., Ally, A., Arachchi, H., Asa, S. L., J Auman, T., Balasundaram, M., Balu, S., Baylin, S. B., and , “Integrated genomic characterization of papillary thyroid carcinoma”, Cell, vol. 159, pp. 676–690, 2014.

G. Thomas, Youngren, J., Ryan, C. J., Beer, T. M., Gleave, M. Edwin, Evans, C. P., Stuart, J., Rettig, M., Toschi, A., Foye, A., and , “Molecular profiling of metastatic castration-resistant prostate cancer (mCRPC): Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team (WCDT).”. American Society of Clinical Oncology, 2014.

K. A. Hoadley, Yau, C., Wolf, D. M., Cherniack, A. D., Tamborero, D., Ng, S., Leiserson, M. D. M., Niu, B., McLellan, M. D., Uzunangelov, V., and , “Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin”, Cell, vol. 158, pp. 929–944, 2014.

A. Bivol, Baertsch, R., Sokolov, A., Paull, E., Newton, Y., Goldstein, T. C., Foye, A., Pourmand, N., Youngren, J., Parulkar, R., and , “Pathway-based signature analysis of RNA-seq data to reveal new targetable avenues for metastatic castration-resistant prostate cancer (mCRPC) patients (pts): Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team (WCDT).”. American Society of Clinical Oncology, 2014.

A. J. Radenbaugh, Ma, S., Ewing, A., Stuart, J. M., Collisson, E. A., Zhu, J., and Haussler, D., “RADIA: RNA and DNA integrated analysis for somatic mutation detection”, PloS one, vol. 9, p. e111516, 2014.

E. Collisson, Radenbaugh, A. J., Ma, S., Ewing, A., Stuart, J. M., Collisson, E. A., Zhu, J., and Haussler, D., “RADIA: RNA and DNA integrated analysis for somatic mutation detection”, 2014.

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