AKLIMATE

Algorithm for Kernel Learning with Integrative Modulesof Approximating Tree Ensembles

bioRxiv

Highly Accurate Cancer Phenotype Prediction with AKLIMATE, a Stacked Kernel Learner Integrating Multimodal Genomic Data and Pathway Knowledge Vladislav Uzunangelov, Christopher K Wong, Josh Stuart bioRxiv 2020.07.15.205575; doi: https://doi.org/10.1101/2020.07.15.205575 https://www.biorxiv.org/content/10.1101/2020.07.15.205575v1

Docker

A Docker image of an AKLIMATE installation is available.

docker pull stuartlab/aklimate:latest

Github

The AKLIMATE Github repo has installation instructions for the AKLIMATE R package as well as description of parameters and options for its use.

https://github.com/VladoUzunangelov/aklimate

Code Examples

example data: Github link

basic example: Github link

advanced example: Github link