Algorithm for Kernel Learning with Integrative Modulesof Approximating Tree Ensembles
Highly Accurate Cancer Phenotype Prediction with AKLIMATE, a Stacked Kernel Learner Integrating Multimodal Genomic Data and Pathway Knowledge Vladislav Uzunangelov, Christopher K Wong, Josh Stuart bioRxiv 2020.07.15.205575; doi: https://doi.org/10.1101/2020.07.15.205575 https://www.biorxiv.org/content/10.1101/2020.07.15.205575v1
A Docker image of an AKLIMATE installation is available.
docker pull stuartlab/aklimate:latest
The AKLIMATE Github repo has installation instructions for the AKLIMATE R package as well as description of parameters and options for its use.
https://github.com/VladoUzunangelov/aklimate
example data: Github link
basic example: Github link
advanced example: Github link