Biblio

Found 13 results
Filters: Author is Ellrott, Kyle  [Clear All Filters]
2018
A. Ying- Wah Lee, Ewing, A. D., Ellrott, K., Hu, Y., Houlahan, K. E., J Bare, C., Espiritu, S. Melijah G., Huang, V., Dang, K., Chong, Z., and , “Combining accurate tumour genome simulation with crowd sourcing to benchmark somatic structural variant detection”, bioRxiv, p. 224733, 2018.
D. H. Sendorek, Caloian, C., Ellrott, K., J Bare, C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M., and , “Germline contamination and leakage in whole genome somatic single nucleotide variant detection”, BMC bioinformatics, vol. 19, p. 28, 2018.
2017
D. E. Carlin, Paull, E. O., Graim, K., Wong, C. K., Bivol, A., Ryabinin, P., Ellrott, K., Sokolov, A., and Stuart, J. M., “Prophetic Granger Causality to infer gene regulatory networks”, PloS one, vol. 12, p. e0170340, 2017.
Y. Newton, Novak, A. M., Swatloski, T., McColl, D. C., Chopra, S., Graim, K., Weinstein, A. S., Baertsch, R., Salama, S. R., Ellrott, K., and , “TumorMap: exploring the molecular similarities of cancer samples in an interactive portal”, Cancer research, vol. 77, pp. e111–e114, 2017.
2015
A. D. Ewing, Houlahan, K. E., Hu, Y., Ellrott, K., Caloian, C., Yamaguchi, T. N., J Bare, C., P'ng, C., Waggott, D., Sabelnykova, V. Y., and , “Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection”, Nature methods, vol. 12, p. 623, 2015.
2014
P. C. Boutros, Ewing, A. D., Ellrott, K., Norman, T. C., Dang, K. K., Hu, Y., Kellen, M. R., Suver, C., J Bare, C., Stein, L. D., and , “Global optimization of somatic variant identification in cancer genomes with a global community challenge”, Nature genetics, vol. 46, p. 318, 2014.
2013
L. Omberg, Ellrott, K., Yuan, Y., Kandoth, C., Wong, C., Kellen, M. R., Friend, S. H., Stuart, J., Liang, H., and Margolin, A. A., “Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas”, Nature genetics, vol. 45, p. 1121, 2013.
B. Craft, Swatloski, T., Goldman, M., Ellrott, K., Ma, S., Wilks, C., Stuart, J., Haussler, D., and Zhu, J., “The New UCSC Cancer Genomics Browser”, Nucleic Acids Research, vol. 41, no. D1, 2013.
M. Goldman, Craft, B., Swatloski, T., Ellrott, K., Cline, M., Diekhans, M., Ma, S., Wilks, C., Stuart, J., Haussler, D., and Zhu, J., “The UCSC Cancer Genomics Browser: update 2013.”, Nucleic Acids Res, vol. 41, pp. D949–D954, 2013.
J. N. Weinstein, Collisson, E. A., Mills, G. B., Shaw, K. R. Mills, Ozenberger, B. A., Ellrott, K., Shmulevich, I., Sander, C., Stuart, J. M., Network, C. Genome Atl, and , “The cancer genome atlas pan-cancer analysis project”, Nature genetics, vol. 45, p. 1113, 2013.
2012
S. Ng, Thusberg, J., Benz, S., Vaske, C., Ellrott, K., Zhu, J., Yau, C., Collisson, E., Mooney, S., Benz, C., and , “Predicting the impact of mutations in cancer using an integrated pathway approach”. American Association for Cancer Research, 2012.
M. Goldman, Craft, B., Swatloski, T., Ellrott, K., Cline, M., Diekhans, M., Wilks, C., Stuart, J., Haussler, D., and Zhu, J., “The UCSC cancer genomics browser: update 2013”, Nucleic acids research, vol. 41, pp. D949–D954, 2012.
2011
B. Craft, Ellrott, K., Goldman, M., Wilks, C., Szeto, C., Ma, S., Stuart, J., Zhu, J., and Haussler, D., “Abstract A39: The UCSC Cancer Genomics Browser”. American Association for Cancer Research, 2011.