Biblio

Found 20 results

Filters: Author is Stuart, Josh [Clear All Filters]

2017

H. Beale, Lam, D. Linh, Vivian, J., Newton, Y., Shah, A. Tayi, Bjork, I., Goldstein, T., Brooks, A. N., Stuart, J., Salama, S., and , “Identifying confidently measured genes in single pediatric cancer patient samples using RNA sequencing”. American Association for Cancer Research, 2017.

O. Morozova, Newton, Y., Shah, A. Tayi, Beale, H., Lam, D. Linh, Vivian, J., Bjork, I., Goldstein, T., Stuart, J., Salama, S., and , “A pan-cancer analysis framework for incorporating gene expression information into clinical interpretation of pediatric cancer genomic data”. American Association for Cancer Research, 2017.

2016

W. Kim, Ryan, C. J., Zhang, L., Youngren, J., Wilton, J., Alumkal, J. J., Beer, T. M., Baertsch, R., Stuart, J., Chi, K. N., and , “Dehydroepiandrosterone (DHEA) in metastatic castration-resistant prostate cancer (mCRPC): Preliminary results from the SU2C/PCF/AACR West Coast Dream Team (WCDT).”. American Society of Clinical Oncology, 2016.

W. Kim, Ryan, C. J., Zhang, L., Youngren, J., Wilton, J., Alumkal, J. J., Beer, T. M., Baertsch, R., Stuart, J., Chi, K. N., and , “Dehydroepiandrosterone in metastatic castration-resistant prostate cancer: Preliminary results from the SU2C-PCF West Coast Dream Team (WCDT).”. American Society of Clinical Oncology, 2016.

M. Hafner, Niepel, M., Duan, Q., Paull, E., Stuart, J., Subramanian, A., Ma’ayan, A., and Sorger, P. K., “Transcriptional landscape of drug response guides the design of potent and synergistic drug combinations”. American Association for Cancer Research, 2016.

2014

C. Yau, Benz, S., Vaske, C., Ng, S., Stuart, J., and Benz, C. C., “Differential pathway activation associated with domain-specific PIK3CA mutations”, Cancer Research, vol. 74, pp. 4165–4165, 2014.

A. Bivol, Graim, K., Paull, E., Carlin, D., Baertsch, R., Sokolov, A., and Stuart, J., “Identification of pathways relevant for metastatic site prediction in prostate cancer”. American Association for Cancer Research, 2014.

J. J. Alumkal, Heiser, L., Beer, T. M., Small, E. Jay, Baertsch, R., Stuart, J., King, C., Korkola, J., Cetnar, J., Graff, J. Nicole, and , “Identifying enzalutamide resistance mechanisms in men with castration-resistant prostate cancer.”. American Society of Clinical Oncology, 2014.

G. Thomas, Youngren, J., Ryan, C. J., Beer, T. M., Gleave, M. Edwin, Evans, C. P., Stuart, J., Rettig, M., Toschi, A., Foye, A., and , “Molecular profiling of metastatic castration-resistant prostate cancer (mCRPC): Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team (WCDT).”. American Society of Clinical Oncology, 2014.

D. M. Wolf, Fan, C., Hoadley, K. A., Yau, C., Sokolov, A., Network, T. C. G. A., Stuart, J., Perou, C., and Veer, Lvan't, “Thousands of published cancer signatures and pathways can be collapsed into a handful of non-redundant gene programs: a TCGA pan-cancer analysis”. American Association for Cancer Research, 2014.

2013

L. Omberg, Ellrott, K., Yuan, Y., Kandoth, C., Wong, C., Kellen, M. R., Friend, S. H., Stuart, J., Liang, H., and Margolin, A. A., “Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas”, Nature genetics, vol. 45, p. 1121, 2013.

B. Craft, Swatloski, T., Goldman, M., Ellrott, K., Ma, S., Wilks, C., Stuart, J., Haussler, D., and Zhu, J., “The New UCSC Cancer Genomics Browser”, Nucleic Acids Research, vol. 41, no. D1, 2013.

M. Goldman, Craft, B., Swatloski, T., Ellrott, K., Cline, M., Diekhans, M., Ma, S., Wilks, C., Stuart, J., Haussler, D., and Zhu, J., “The UCSC Cancer Genomics Browser: update 2013.”, Nucleic Acids Res, vol. 41, pp. D949–D954, 2013.

2012

M. Goldman, Craft, B., Swatloski, T., Ellrott, K., Cline, M., Diekhans, M., Wilks, C., Stuart, J., Haussler, D., and Zhu, J., “The UCSC cancer genomics browser: update 2013”, Nucleic acids research, vol. 41, pp. D949–D954, 2012.

2011

B. Craft, Ellrott, K., Goldman, M., Wilks, C., Szeto, C., Ma, S., Stuart, J., Zhu, J., and Haussler, D., “Abstract A39: The UCSC Cancer Genomics Browser”. American Association for Cancer Research, 2011.

2007

N. Salomonis, Hanspers, K., Zambon, A., Vranizan, K., Lawlor, S., Dahlquist, K., Doniger, S., Stuart, J., Conklin, B., and Pico, A., “GenMAPP 2: new features and resources for pathway analysis”, BMC Bioinformatics, vol. 8, p. 217, 2007.

N. Salomonis, Hanspers, K., Zambon, A. C., Vranizan, K., Lawlor, S. C., Dahlquist, K. D., Doniger, S. W., Stuart, J., Conklin, B. R., and Pico, A. R., “GenMAPP 2: new features and resources for pathway analysis”, BMC bioinformatics, vol. 8, p. 217, 2007.

2005

M. Weirauch and Stuart, J., “Discovering functional transcription factor binding from superimposed gene networks”, in Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts. IEEE, 2005, pp. 178–179.

2003

A. B. Owen, Stuart, J., Mach, K., Villeneuve, A. M., and Kim, S., “A Gene Recommender Algorithm to Identify Coexpressed Genes in C. elegans”, Genome Research, vol. 13, pp. 1828-1837, 2003.

A. B. Owen, Stuart, J., Mach, K., Villeneuve, A. M., and Kim, S., “A gene recommender algorithm to identify coexpressed genes in C. elegans”, Genome research, vol. 13, pp. 1828–1837, 2003.