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Found 17 results
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Sokolov, Artem
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2018
T. M. Malta
,
Sokolov, A.
,
Gentles, A. J.
,
Burzykowski, T.
,
Poisson, L.
,
Weinstein, J. N.
,
Kamińska, B.
,
Huelsken, J.
,
Omberg, L.
,
Gevaert, O.
, and
,
“
Machine learning identifies stemness features associated with oncogenic dedifferentiation
”
,
Cell
, vol. 173, pp. 338–354, 2018.
2017
D. E. Carlin
,
Paull, E. O.
,
Graim, K.
,
Wong, C. K.
,
Bivol, A.
,
Ryabinin, P.
,
Ellrott, K.
,
Sokolov, A.
, and
Stuart, J. M.
,
“
Prophetic Granger Causality to infer gene regulatory networks
”
,
PloS one
, vol. 12, p. e0170340, 2017.
2016
E. Jay Small
,
Aggarwal, R. Raj
,
Huang, J.
,
Sokolov, A.
,
Zhang, L.
,
Alumkal, J. J.
,
Youngren, J.
,
Ryan, C. J.
,
Foye, A.
,
Reiter, R. Evan
, and
,
“
Clinical and genomic characterization of metastatic small cell/neuroendocrine prostate cancer (SCNC) and intermediate atypical prostate cancer (IAC): Results from the SU2C/PCF/AACRWest Coast Prostate Cancer Dream Team (WCDT).
”
. American Society of Clinical Oncology, 2016.
S. M. Hill
,
Heiser, L. M.
,
Cokelaer, T.
,
Unger, M.
,
Nesser, N. K.
,
Carlin, D. E.
,
Zhang, Y.
,
Sokolov, A.
,
Paull, E. O.
,
Wong, C. K.
, and
,
“
Inferring causal molecular networks: empirical assessment through a community-based effort
”
,
Nature methods
, vol. 13, p. 310, 2016.
J. K. Lee
,
Phillips, J. W.
,
Smith, B. A.
,
Park, J. Wook
,
Stoyanova, T.
,
McCaffrey, E. F.
,
Baertsch, R.
,
Sokolov, A.
,
Meyerowitz, J. G.
,
Mathis, C.
, and
,
“
N-Myc drives neuroendocrine prostate cancer initiated from human prostate epithelial cells
”
,
Cancer cell
, vol. 29, pp. 536–547, 2016.
A. Sokolov
,
Paull, E. O.
, and
Stuart, J. M.
,
“
One-class detection of cell states in tumor subtypes
”
, in
Biocomputing 2016: Proceedings of the Pacific Symposium
, 2016, pp. 405–416.
A. Sokolov
,
Carlin, D. E.
,
Paull, E. O.
,
Baertsch, R.
, and
Stuart, J. M.
,
“
Pathway-based genomics prediction using generalized elastic net
”
,
PLoS computational biology
, vol. 12, p. e1004790, 2016.
R. Raj Aggarwal
,
Youngren, J.
,
Sokolov, A.
,
Huang, J.
,
Thomas, G. V.
,
True, L. D.
,
Foye, A.
,
Alumkal, J. J.
,
Ryan, C. J.
,
Beer, T. M.
, and
,
“
Persistence of AR signaling in small cell neuroendocrine prostate cancer (SCNC) and intermediate atypical carcinoma (IAC): Results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team (WCDT).
”
. American Society of Clinical Oncology, 2016.
2015
E. Jay Small
,
Huang, J.
,
Youngren, J.
,
Sokolov, A.
,
Aggarwal, R. Raj
,
Thomas, G.
,
True, L. D.
,
Zhang, L.
,
Foye, A.
,
Alumkal, J. J.
, and
,
“
Characterization of neuroendocrine prostate cancer (NEPC) in patients with metastatic castration resistant prostate cancer (mCRPC) resistant to abiraterone (Abi) or enzalutamide (Enz): Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer
”
. American Society of Clinical Oncology, 2015.
B. A. Smith
,
Sokolov, A.
,
Uzunangelov, V.
,
Baertsch, R.
,
Newton, Y.
,
Graim, K.
,
Mathis, C.
,
Cheng, D.
,
Stuart, J. M.
, and
Witte, O. N.
,
“
A basal stem cell signature identifies aggressive prostate cancer phenotypes
”
,
Proceedings of the National Academy of Sciences
, vol. 112, pp. E6544–E6552, 2015.
2014
Y. Yuan
,
Van Allen, E. M.
,
Omberg, L.
,
Wagle, N.
,
Amin-Mansour, A.
,
Sokolov, A.
,
Byers, L. A.
,
Xu, Y.
,
Hess, K. R.
,
Diao, L.
, and
,
“
Assessing the clinical utility of cancer genomic and proteomic data across tumor types
”
,
Nature biotechnology
, vol. 32, p. 644, 2014.
A. Bivol
,
Graim, K.
,
Paull, E.
,
Carlin, D.
,
Baertsch, R.
,
Sokolov, A.
, and
Stuart, J.
,
“
Identification of pathways relevant for metastatic site prediction in prostate cancer
”
. American Association for Cancer Research, 2014.
A. Bivol
,
Baertsch, R.
,
Sokolov, A.
,
Paull, E.
,
Newton, Y.
,
Goldstein, T. C.
,
Foye, A.
,
Pourmand, N.
,
Youngren, J.
,
Parulkar, R.
, and
,
“
Pathway-based signature analysis of RNA-seq data to reveal new targetable avenues for metastatic castration-resistant prostate cancer (mCRPC) patients (pts): Preliminary results from the SU2C/PCF/AACR West Coast Prostate Cancer Dream Team (WCDT).
”
. American Society of Clinical Oncology, 2014.
D. M. Wolf
,
Fan, C.
,
Hoadley, K. A.
,
Yau, C.
,
Sokolov, A.
,
Network, T. C. G. A.
,
Stuart, J.
,
Perou, C.
, and
Veer, Lvan't
,
“
Thousands of published cancer signatures and pathways can be collapsed into a handful of non-redundant gene programs: a TCGA pan-cancer analysis
”
. American Association for Cancer Research, 2014.
2012
S. Ng
,
Collisson, E. A.
,
Sokolov, A.
,
Goldstein, T.
,
Gonzalez-Perez, A.
,
Lopez-Bigas, N.
,
Benz, C.
,
Haussler, D.
, and
Stuart, J. M.
,
“
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis
”
,
Bioinformatics
, vol. 28, pp. i640-i646, 2012.
S. Ng
,
Collisson, E. A.
,
Sokolov, A.
,
Goldstein, T.
,
Gonzalez-Perez, A.
,
Lopez-Bigas, N.
,
Benz, C.
,
Haussler, D.
, and
Stuart, J. M.
,
“
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis
”
,
Bioinformatics
, vol. 28, pp. i640–i646, 2012.
2010
J. K. Lee
,
Phillips, J. W.
,
Smith, B. A.
,
Park, J. Wook
,
Stoyanova, T.
,
Baertsch, R.
,
Sokolov, A.
,
Meyerowitz, J. G.
,
Mathis, C.
,
Cheng, D.
, and
,
“
N-Myc drives small cell neuroendocrine carcinoma initiated from human prostate epithelial cells
”
,
Science (New York, NY)
, vol. 329, p. 568, 2010.