Biblio

Found 231 results

2009

C. J. Vaske, House, C., Luu, T., Frank, B., Yeang, C. - H., Lee, N. H., and Stuart, J. M., “A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations”, PLoS Comput Biol, vol. 5, p. e1000274, 2009.

Genome 10K Community of Scientists, “Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10”, Journal of Heredity, vol. 100, pp. 659-674, 2009.

G. 10K. Commun Scientists, “Genome 10K: a proposal to obtain whole-genome sequence for 10 000 vertebrate species”, Journal of Heredity, vol. 100, pp. 659–674, 2009.

P. N. Kanabar, Vaske, C. J., Yeang, C. H., Yildiz, F. H., and Stuart, J. M., “Inferring Disease-Related Pathways Using A Probabilistic Epistasis Model”, in Pacific Symposium on Biocomputing, 2009, vol. 14, pp. 480-491.

P. N. Kanabar, Vaske, C. J., Yeang, C. - H., Yildiz, F. H., and Stuart, J. M., “Inferring disease-related pathways using a probabilistic epistasis model”, in Biocomputing 2009, 2009, pp. 480–491.

A. E. Cozen, Weirauch, M. T., Pollard, K. S., Bernick, D. L., Stuart, J. M., and Lowe, T. M., “Transcriptional Map of Respiratory Versatility in the Hyperthermophilic Crenarchaeon Pyrobaculum aerophilum”, Journal of Bacteriology, vol. 191, pp. 782-794, 2009.

A. E. Cozen, Weirauch, M. T., Pollard, K. S., Bernick, D. L., Stuart, J. M., and Lowe, T. M., “Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum”, Journal of bacteriology, vol. 191, pp. 782–794, 2009.

J. Zhu, J Sanborn, Z., Benz, S., Szeto, C., Hsu, F., Kuhn, R. M., Karolchik, D., Archie, J., Lenburg, M. E., Esserman, L. J., and , “The UCSC cancer genomics browser”, Nature methods, vol. 6, p. 239, 2009.

C. J. Vaske, House, C., Luu, T., Frank, B., Yeang, C. - H., Lee, N. H., and Stuart, J. M., “A factor graph nested effects model to identify networks from genetic perturbations”, PLoS computational biology, vol. 5, p. e1000274, 2009.

2008

M. Weirauch, Wong, C., Byrne, A., and Stuart, J., “Information-based methods for predicting gene function from systematic gene knock-downs”, BMC Bioinformatics, vol. 9, p. 463, 2008.

2007

N. Salomonis, Hanspers, K., Zambon, A., Vranizan, K., Lawlor, S., Dahlquist, K., Doniger, S., Stuart, J., Conklin, B., and Pico, A., “GenMAPP 2: new features and resources for pathway analysis”, BMC Bioinformatics, vol. 8, p. 217, 2007.

N. Salomonis, Hanspers, K., Zambon, A. C., Vranizan, K., Lawlor, S. C., Dahlquist, K. D., Doniger, S. W., Stuart, J., Conklin, B. R., and Pico, A. R., “GenMAPP 2: new features and resources for pathway analysis”, BMC bioinformatics, vol. 8, p. 217, 2007.

J. M. Stuart, Bradley, E., Capps, D., and Luftig, J., “Generating Novel, Stylistically Consonant Variations on Human Movement Sequences”, 2007.

A. Byrne, Weirauch, M., Wong, V., Koeva, M., Dixon, S. J., Stuart, J. M., and Roy, P. J., “Genetic Interactions Bridge Functional Modules on a Global Scale in C. elegans.”, in International Worm Meeting, 2007.

D. M. Ng, Woehrmann, M. H., and Stuart, J. M., “Recommending pathway genes using a compendium of clustering solutions”, in Pacific Symposium on Biocomputing, 2007.

D. M. Ng, Woehrmann, M. H., and Stuart, J. M., “Recommending pathway genes using a compendium of clustering solutions”, in Biocomputing 2007, 2007, pp. 379–390.

Z. Hu, Mellor, J., Wu, J., Kanehisa, M., Stuart, J. M., and DeLisi, C., “Towards zoomable multidimensional maps of the cell”, Nat Biotech, vol. 25, pp. 547–554, 2007.

Z. Hu, Mellor, J., Wu, J., Kanehisa, M., Stuart, J. M., and DeLisi, C., “Towards zoomable multidimensional maps of the cell”, Nature biotechnology, vol. 25, p. 547, 2007.

Z. Hu, Ng, D. M., Yamada, T., Chen, C., Kawashima, S., Mellor, J., Linghu, B., Kanehisa, M., Stuart, J. M., and DeLisi, C., “VisANT 3.0: new modules for pathway visualization, editing, prediction and construction”, Nucleic Acids Research, vol. 35, pp. W625-W632, 2007.

Z. Hu, Ng, D. M., Yamada, T., Chen, C., Kawashima, S., Mellor, J., Linghu, B., Kanehisa, M., Stuart, J. M., and DeLisi, C., “VisANT 3.0: new modules for pathway visualization, editing, prediction and construction”, Nucleic acids research, vol. 35, pp. W625–W632, 2007.

A. Byrne, Weirauch, M., Wong, V., Koeva, M., Dixon, S., Stuart, J., and Roy, P., “A global analysis of genetic interactions in Caenorhabditis elegans”, Journal of Biology, vol. 6, p. 8, 2007.

A. B. Byrne, Weirauch, M. T., Wong, V., Koeva, M., Dixon, S. J., Stuart, J. M., and Roy, P. J., “A global analysis of genetic interactions in Caenorhabditis elegans”, Journal of biology, vol. 6, p. 8, 2007.

C. Chen, Weirauch, M., Powell, C., Zambon, A., and Stuart, J., “A search engine to identify pathway genes from expression data on multiple organisms”, BMC Systems Biology, vol. 1, p. 20, 2007.

2006

J. Quackenbush, Ramos, K., Shmulevich, I., Stuart, J., and Waters, M., “Genomic Approaches for Cross-Species Extrapolation in Toxicology”, W. H. Benson and Giulio, D. R. T., Eds. Joint SETAC-SOP Pellston Workshop 18-22 July 2004, 2006, pp. 103-42.

C. S. Park, Gong, R., Stuart, J., and Tang, S. - J., “Molecular Network and Chromosomal Clustering of Genes Involved in Synaptic Plasticity in the Hippocampus”, Journal of Biological Chemistry, vol. 281, pp. 30195-30211, 2006.

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